Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs150701428 chr11:36308798 T/C 0.000103 477 30.53 32.45 27.57 KM Plot
PRAD rs150714696 chr15:64432001 A/G 9.69E-6 490 31.27 27.47 42.67 KM Plot
PRAD rs150733650 chr22:21358919 CCTGA/C 8.7E-5 476 31.27 28.43 30.4 KM Plot
PRAD rs150863768 chr9:72851320 C/T 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs150873 chr7:73606190 A/G 6.67E-5 489 24.83 28.43 31.37 KM Plot
PRAD rs150883593 chr2:107440921 T/G 3.36E-5 492 30.97 30.53 32.63 KM Plot
PRAD rs151096062 chr1:201129749 AT/A 2.22E-11 479 43.53 30.87 30.9 KM Plot
PRAD rs151243268 chr1:93731458 CA/C 3.77E-6 492 31.37 26.8 18.97 KM Plot
PRAD rs1529083 chr7:154941814 G/A 2.95E-6 484 30.8 31.13 37.42 KM Plot
PRAD rs1530719 chr2:129056518 G/A 3.53E-5 475 31.27 29.17 31.43 KM Plot
PRAD rs1532858 chr1:31762374 C/T 1.82E-6 493 22.85 31.25 31.27 KM Plot
PRAD rs1545246 chr15:99974743 A/G 9.63E-7 494 61.83 26.1 31.37 KM Plot
PRAD rs1587381 chr15:76769620 G/A 8.02E-5 494 28.3 31.87 30.87 KM Plot
PRAD rs1589113 chr1:169270744 C/T 2.68E-5 494 21.2 29.4 31.27 KM Plot
PRAD rs15968 chr17:37819335 C/G 5.4E-6 493 30.8 33.05 28.63 KM Plot